5YBG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 8SO, ACT, GLU, GOL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, F, D, E, C, A


Primary referenceHBT1, a novel AMPA receptor potentiator with lower agonistic effect, avoided bell-shaped response in in vitro BDNF production., Kunugi A, Tajima Y, Kuno H, Sogabe S, Kimura H, J Pharmacol Exp Ther. 2018 Jan 3. pii: jpet.117.245050. doi:, 10.1124/jpet.117.245050. PMID:29298820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (5ybg.pdb1.gz) 180 Kb
  • Biological Unit Coordinates (5ybg.pdb2.gz) 181 Kb
  • Biological Unit Coordinates (5ybg.pdb3.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 5YBG
  • CSU: Contacts of Structural Units for 5YBG
  • Structure Factors (2589 Kb)
  • Retrieve 5YBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YBG from S2C, [Save to disk]
    • View 5YBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ybg_A] [5ybg_B] [5ybg_C] [5ybg_D] [5ybg_E] [5ybg_F]
  • SWISS-PROT database:

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