5YBL		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	AKG, MN	enzyme
Gene Ontology	Chain Function Process Component D, B, C, A
Primary reference	Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis., Nakashima Y, Mori T, Nakamura H, Awakawa T, Hoshino S, Senda M, Senda T, Abe I, Nat Commun. 2018 Jan 9;9(1):104. doi: 10.1038/s41467-017-02371-w. PMID:29317628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (5ybl.pdb1.gz) 82 Kb Biological Unit Coordinates (5ybl.pdb2.gz) 83 Kb LPC: Ligand-Protein Contacts for 5YBL CSU: Contacts of Structural Units for 5YBL Structure Factors (1820 Kb) Retrieve 5YBL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YBL from S2C, [Save to disk]

View 5YBL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ybl_D] [5ybl_A] [5ybl_B] [5ybl_C] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---