5YD0 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Primary referenceStructure of Schlafen13 reveals a new class of tRNA/rRNA- targeting RNase engaged in translational control., Yang JY, Deng XY, Li YS, Ma XC, Feng JX, Yu B, Chen Y, Luo YL, Wang X, Chen ML, Fang ZX, Zheng FX, Li YP, Zhong Q, Kang TB, Song LB, Xu RH, Zeng MS, Chen W, Zhang H, Xie W, Gao S, Nat Commun. 2018 Mar 21;9(1):1165. doi: 10.1038/s41467-018-03544-x. PMID:29563550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (5yd0.pdb1.gz) 218 Kb
  • Biological Unit Coordinates (5yd0.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 5YD0
  • CSU: Contacts of Structural Units for 5YD0
  • Structure Factors (635 Kb)
  • Retrieve 5YD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YD0 from S2C, [Save to disk]
    • View 5YD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yd0_A] [5yd0_B] [5yd0_C] [5yd0_D]
  • SWISS-PROT database:

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