5YD3		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL, SO4	enzyme
Gene Ontology	Chain Function Process Component E, A, C, G
Primary reference	Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody., Miyanabe K, Akiba H, Kuroda D, Nakakido M, Kusano-Arai O, Iwanari H, Hamakubo T, Caaveiro JMM, Tsumoto K, J Biochem. 2018 Jul 1;164(1):65-76. doi: 10.1093/jb/mvy032. PMID:29924367

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk] Biological Unit Coordinates (5yd3.pdb1.gz) 89 Kb Biological Unit Coordinates (5yd3.pdb2.gz) 87 Kb Biological Unit Coordinates (5yd3.pdb3.gz) 89 Kb Biological Unit Coordinates (5yd3.pdb4.gz) 94 Kb LPC: Ligand-Protein Contacts for 5YD3 CSU: Contacts of Structural Units for 5YD3 Structure Factors (8866 Kb) Retrieve 5YD3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YD3 from S2C, [Save to disk]

View 5YD3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yd3_A] [5yd3_B] [5yd3_C] [5yd3_D] [5yd3_E] [5yd3_F] [5yd3_G] [5yd3_H] SWISS-PROT database:

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