5YG0 Transferase Inhibitor date Sep 22, 2017
title Plasmodium Vivax Shmt Bound With Plp-Glycine And Gs657
authors P.Chitnumsub, A.Jaruwat, U.Leartsakulpanich, G.Schwertz, F.Diede
compound source
Molecule: Serine Hydroxymethyltransferase
Chain: A, B, C
Ec: 2.1.2.1
Engineered: Yes
 Organism_scientific: Plasmodium Vivax
Organism_taxid: 5855
Gene: Pvc01_140059500, Pvp01_1453700, Pvt01_140059000
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.561 58.615 233.052 90.00 90.02 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand 8UR, CL, PLG enzyme Transferase E.C.2.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (5yg0.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (5yg0.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 5YG0
  • CSU: Contacts of Structural Units for 5YG0
  • Structure Factors (913 Kb)
  • Retrieve 5YG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YG0 from S2C, [Save to disk]
    • View 5YG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5YG0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yg0_C] [5yg0_A] [5yg0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5YG0
  • Community annotation for 5YG0 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science