5YMT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GAL, GLC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, I, A, G, C, K, H, B, F, N, M, J, E, L


Primary referenceGlycan Binding Specificity and Mechanism of Human and Porcine P[6]/P[19] Rotavirus VP8*s., Sun X, Li D, Qi J, Chai W, Wang L, Wang L, Peng R, Wang H, Zhang Q, Pang L, Kong X, Wang H, Jin M, Gao GF, Duan Z, J Virol. 2018 May 2. pii: JVI.00538-18. doi: 10.1128/JVI.00538-18. PMID:29720519
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (738 Kb) [Save to disk]
  • Biological Unit Coordinates (5ymt.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (5ymt.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (5ymt.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (5ymt.pdb4.gz) 59 Kb
  • Biological Unit Coordinates (5ymt.pdb5.gz) 57 Kb
  • Biological Unit Coordinates (5ymt.pdb6.gz) 57 Kb
  • Biological Unit Coordinates (5ymt.pdb7.gz) 60 Kb
  • Biological Unit Coordinates (5ymt.pdb8.gz) 57 Kb
  • Biological Unit Coordinates (5ymt.pdb9.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5YMT
  • CSU: Contacts of Structural Units for 5YMT
  • Structure Factors (2214 Kb)
  • Retrieve 5YMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YMT from S2C, [Save to disk]
    • View 5YMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ymt_A] [5ymt_B] [5ymt_C] [5ymt_D] [5ymt_E] [5ymt_F] [5ymt_G] [5ymt_H] [5ymt_I] [5ymt_J] [5ymt_K] [5ymt_L] [5ymt_M] [5ymt_N]
  • SWISS-PROT database:

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