5YPY Transferase date Nov 04, 2017
title Crystal Structure Of Ilvn. Val-1c
authors S.P.Sarma, A.Bansal, H.Schindelin, B.Demeler
compound source
Molecule: Acetolactate Synthase Isozyme 1 Small Subunit
Chain: A, B, C, D
Synonym: Acetohydroxy-Acid Synthase I Small Subunit,Als-I
Ec: 2.2.1.6
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Ilvn, B3670, Jw3645
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.519 74.510 63.270 90.00 97.58 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand VAL enzyme Transferase E.C.2.2.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • acetolactate synthase regula...


  • Primary referenceCrystallographic Structures of IlvN.Val/Ile Complexes: Conformational Selectivity for Feedback Inhibition of Aceto Hydroxy Acid Synthases., Bansal A, Karanth NM, Demeler B, Schindelin H, Sarma SP, Biochemistry. 2019 Mar 29. doi: 10.1021/acs.biochem.9b00050. PMID:30887800
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (5ypy.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5ypy.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5YPY
  • CSU: Contacts of Structural Units for 5YPY
  • Structure Factors (1779 Kb)
  • Retrieve 5YPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YPY from S2C, [Save to disk]
  • View 5YPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YPY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ypy_D] [5ypy_C] [5ypy_A] [5ypy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YPY
  • Community annotation for 5YPY at PDBWiki (http://pdbwiki.org)

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