5YSK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component D, B, A, C
Primary reference	Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila., Kim L, Kwon DH, Kim BH, Kim J, Park MR, Park ZY, Song HK, J Mol Biol. 2018 Aug 17;430(17):2843-2856. doi: 10.1016/j.jmb.2018.05.043. Epub, 2018 Jun 2. PMID:29870726

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (5ysk.pdb1.gz) 42 Kb Biological Unit Coordinates (5ysk.pdb2.gz) 42 Kb Biological Unit Coordinates (5ysk.pdb3.gz) 42 Kb Biological Unit Coordinates (5ysk.pdb4.gz) 44 Kb LPC: Ligand-Protein Contacts for 5YSK CSU: Contacts of Structural Units for 5YSK Structure Factors (526 Kb) Retrieve 5YSK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YSK from S2C, [Save to disk]

View 5YSK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ysk_A] [5ysk_B] [5ysk_C] [5ysk_D] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---