5YSR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5AD, B12, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A


D, B


Primary referenceDirect Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12 Catalysis., Shibata N, Sueyoshi Y, Higuchi Y, Toraya T, Angew Chem Int Ed Engl. 2018 Jun 25;57(26):7830-7835. doi:, 10.1002/anie.201803591. Epub 2018 May 25. PMID:29797764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (479 Kb) [Save to disk]
  • Biological Unit Coordinates (5ysr.pdb1.gz) 1397 Kb
  • LPC: Ligand-Protein Contacts for 5YSR
  • CSU: Contacts of Structural Units for 5YSR
  • Structure Factors (3702 Kb)
  • Retrieve 5YSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YSR from S2C, [Save to disk]
  • View 5YSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ysr_A] [5ysr_B] [5ysr_C] [5ysr_D]
  • SWISS-PROT database:

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