5YWN Oxidoreductase date Nov 29, 2017
title Sscr_l211h-Nadp+
authors Y.P.Shang, Q.Chen, H.L.Yu, J.H.Xu
compound source
Molecule: Protein Induced By Osmotic Stress
Chain: A
Ec: 1.1.1.195
Engineered: Yes
Mutation: Yes
 Organism_scientific: Scheffersomyces Stipitis (Strain Atcc Cbs 6054 Nbrc 10063 Nrrl Y-11545);
Organism_common: Yeast
Organism_taxid: 322104
Strain: Atcc 58785 Cbs 6054 Nbrc 10063 Nrrl Y-11545
Gene: Grp3.1, Picst_32463
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1 21 1
R_factor 0.166 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.782 53.093 70.768 90.00 95.50 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand NAP enzyme Oxidoreductase E.C.1.1.1.195 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (5ywn.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 5YWN
  • CSU: Contacts of Structural Units for 5YWN
  • Structure Factors (523 Kb)
  • Retrieve 5YWN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YWN from S2C, [Save to disk]
    • View 5YWN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5YWN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ywn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5YWN
  • Community annotation for 5YWN at PDBWiki (http://pdbwiki.org)

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