5YWR	Signaling Protein	date	Nov 30, 2017
title	Crystal Structure Of Ring E3 Ligase Znrf1 In Complex With Ub (Ubc13)
authors	A.P.Behera, P.Naskar, A.B.Datta
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 N Chain: A Synonym: Bendless-Like Ubiquitin-Conjugating Enzyme,E2 Ubiq Conjugating Enzyme N,Ubc13,Ubch13,Ubiquitin Carrier Protein Ubiquitin-Protein Ligase N; Ec: 2.3.2.23 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2n, Blu Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petsumo2
Molecule: E3 Ubiquitin-Protein Ligase Znrf1 Chain: B Synonym: Nerve Injury-Induced Gene 283 Protein,Ring-Type E3 Transferase Znrf1,Zincring Finger Protein 1; Ec: 2.3.2.27 Engineered: Yes Other_details: First 137 Amino Acids Deleted From The Prote		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Znrf1, Nin283 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petsumo2
symmetry	Space Group: P 21 21 21	R_factor 0.165 R_Free 0.184
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.430 59.548 94.792 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.47 Å
ligand	FMT, PGE, ZN	enzyme	Transferase E.C.2.3.2.23 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into the nanomolar affinity of RING E3 ligase ZNRF1 for Ube2N and its functional implications., Behera AP, Naskar P, Agarwal S, Banka PA, Poddar A, Datta AB, Biochem J. 2018 May 9;475(9):1569-1582. doi: 10.1042/BCJ20170909. PMID:29626159

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (5ywr.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 5YWR CSU: Contacts of Structural Units for 5YWR Structure Factors (1947 Kb) Retrieve 5YWR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YWR from S2C, [Save to disk]

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Visual 3D analysis of 5YWR

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ywr_B] [5ywr_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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