5Z58 | Splicing | date | Jan 17, 2018 |
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title | Cryo-Em Structure Of A Human Activated Spliceosome (Early Ba Angstrom. | ||||||||||||||
authors | X.Zhang, C.Yan, X.Zhan, L.Li, J.Lei, Y.Shi | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Pre-Mrna-Processing-Splicing Factor 8 Chain: A Synonym: 220 Kda U5 Snrnp-Specific Protein,Prp8 Homolog,Spl Factor Prp8,P220; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5 Snrna Chain: B |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: 116 Kda U5 Small Nuclear Ribonucleoprotein Compon Chain: C Synonym: Elongation Factor Tu Gtp-Binding Domain-Containing 2,Snu114 Homolog,Hsnu114,U5 Snrnp-Specific Protein,116 Kda, Kda; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5 Small Nuclear Ribonucleoprotein 200 Kda Helica Chain: D Synonym: Activating Signal Cointegrator 1 Complex Subunit 3 Brr2 Homolog,U5 Snrnp-Specific 200 Kda Protein,U5-200kd; Ec: 3.6.4.13 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U5 Small Nuclear Ribonucleoprotein 40 Kda Protein Chain: E Synonym: U5-40k,38 Kda-Splicing Factor,Prp8-Binding Protein U5 Snrnp-Specific 40 Kda Protein,Wd Repeat-Containing Prote |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D3 Chain: a, h Synonym: Sm-D3,Snrnp Core Protein D3 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein-Associated Protei B'; Chain: b, I Synonym: Snrnp-B,Sm Protein Bb',Smbb' |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D1 Chain: c, j Synonym: Sm-D1,Sm-D Autoantigen,Snrnp Core Protein D1 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D2 Chain: d, k Synonym: Sm-D2,Snrnp Core Protein D2 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein F Chain: f, m Synonym: Snrnp-F,Sm Protein F,Smf |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein E Chain: e, l Synonym: Snrnp-E,Sm Protein E,Sme |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein G Chain: g, n Synonym: Snrnp-G,Sm Protein G,Smg |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U6 Snrna Chain: F |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna Chain: G Engineered: Yes |
Synthetic: Yes Organism_scientific: Unidentified Adenovirus Organism_taxid: 10535 | ||||||||||||||
Molecule: U2 Snrna Chain: H |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U2 Small Nuclear Ribonucleoprotein A' Chain: o Synonym: U2 Snrnp A' |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: U2 Small Nuclear Ribonucleoprotein B'' Chain: p Synonym: U2 Snrnp B'' |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3a Subunit 3 Chain: w Synonym: Sf3a60,Spliceosome-Associated Protein 61,Sap 61 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3a Subunit 1 Chain: u Synonym: Sf3a120,Spliceosome-Associated Protein 114,Sap 114 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3a Subunit 2 Chain: v Synonym: Sf3a66,Spliceosome-Associated Protein 62,Sap 62 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 1 Chain: 1 Synonym: Pre-Mrna-Splicing Factor Sf3b 155 Kda Subunit,Sf3b Spliceosome-Associated Protein 155,Sap 155; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 2 Chain: 2 Synonym: Pre-Mrna-Splicing Factor Sf3b 145 Kda Subunit,Sf3b Spliceosome-Associated Protein 145,Sap 145; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 3 Chain: 3 Synonym: Sf3b135, Pre-Mrna-Splicing Factor Sf3b 130 Kda Sub Sf3b130,Staf130,Spliceosome-Associated Protein 130,Sap 130; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 4 Chain: 4 Synonym: Pre-Mrna-Splicing Factor Sf3b 49 Kda Subunit,Splic Associated Protein 49,Sap 49; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 6 Chain: 5 Synonym: Sf3b14b, Pre-Mrna Branch Site Protein P14,Sf3b 14 Subunit,Sf3b14a,Spliceosome-Associated Protein,14-Kda,Splic 3b,Subunit 6,14kda; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Phd Finger-Like Domain-Containing Protein 5a Chain: 6 Synonym: Phd Finger-Like Domain Protein 5a,Splicing Factor Associated 14 Kda Protein,Sf3b14b; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 5 Chain: 7 Synonym: Sf3b5,Pre-Mrna-Splicing Factor Sf3b 10 Kda Subunit |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Crooked Neck-Like Protein 1 Chain: J Synonym: Syf3, Crooked Neck Homolog,Hcrn |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Cell Division Cycle 5-Like Protein Chain: L Synonym: Cdc5-Like Protein,Pombe Cdc5-Related Protein |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Ring Finger Protein 113a Chain: M Synonym: Zinc Finger Protein 183 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Spliceosome-Associated Protein Cwc15 Homolog Chain: P |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Skip Chain: R |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pleiotropic Regulator 1 Chain: T |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Cwc22 Homolog Chain: V Synonym: Nucampholin Homolog,Fsapb |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Smad Nuclear-Interacting Protein 1 Chain: X Synonym: Fha Domain-Containing Protein Snip1 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Rna-Binding Motif Protein, X-Linked 2 Chain: Y |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Bud13 Homolog Chain: Z |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Cwc27 Homolog Chain: z Synonym: Ppiase Cwc27,Antigen Ny-Co-10,Serologically Define Cancer Antigen 10; Ec: 5.2.1.8 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Atp-Dependent Rna Helica Chain: x Synonym: Atp-Dependent Rna Helicase #3,Deah-Box Protein 16 Ec: 3.6.4.13 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 4.90 Å | ||||||||||||
ligand | GTP, IHP, MG, ZN | enzyme | Hydrolase E.C.3.6.4.13 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Structure of the human activated spliceosome in three conformational states., Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y, Cell Res. 2018 Mar;28(3):307-322. doi: 10.1038/cr.2018.14. Epub 2018 Jan 23. PMID:29360106 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |