5Z86 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AZI, CDL, CHD, CU, CUA, DMU, EDO, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • H, U


    I, V
  • cytochrome-c oxidase activit...


    • J, W


    K, X


    N, A


    O, B
  • cytochrome-c oxidase activit...


    • Q, D


    R, E


    S, F


    T, G


    Y, L


    Z, M


    Primary referenceX-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity., Shimada A, Hatano K, Tadehara H, Yano N, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S, J Biol Chem. 2018 Aug 3. pii: RA118.003123. doi: 10.1074/jbc.RA118.003123. PMID:30077971
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1343 Kb) [Save to disk]
  • Biological Unit Coordinates (5z86.pdb1.gz) 662 Kb
  • Biological Unit Coordinates (5z86.pdb2.gz) 666 Kb
  • LPC: Ligand-Protein Contacts for 5Z86
  • CSU: Contacts of Structural Units for 5Z86
  • Structure Factors (8875 Kb)
  • Retrieve 5Z86 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z86 from S2C, [Save to disk]
    • View 5Z86 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z86_A] [5z86_B] [5z86_C] [5z86_D] [5z86_E] [5z86_F] [5z86_G] [5z86_H] [5z86_I] [5z86_J] [5z86_K] [5z86_L] [5z86_M] [5z86_N] [5z86_O] [5z86_P] [5z86_Q] [5z86_R] [5z86_S] [5z86_T] [5z86_U] [5z86_V] [5z86_W] [5z86_X] [5z86_Y] [5z86_Z]
  • SWISS-PROT database:

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