5ZHO Viral Protein date Mar 13, 2018
title Human Group C Rotavirus Vp8s Recognize Type A Histo-Blood G Antigens As Ligands
authors X.Sun, Z.Duan, J.Qi
compound source
Molecule: Outer Capsid Protein Vp8
Chain: A
Synonym: Hemagglutinin
Engineered: Yes
 Organism_scientific: Human Rotavirus C
Organism_taxid: 31567
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 21 21 21
R_factor 0.141 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.985 39.821 119.814 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand A2G, FUC, GLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHuman group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands., Sun X, Wang L, Qi J, Li D, Wang M, Cong X, Peng R, Chai W, Zhang Q, Wang H, Wen H, Gao GF, Tan M, Duan Z, J Virol. 2018 Mar 28. pii: JVI.00442-18. doi: 10.1128/JVI.00442-18. PMID:29593033
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5zho.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 5ZHO
  • CSU: Contacts of Structural Units for 5ZHO
  • Structure Factors (915 Kb)
  • Retrieve 5ZHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZHO from S2C, [Save to disk]
    • View 5ZHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZHO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zho_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZHO
  • Community annotation for 5ZHO at PDBWiki (http://pdbwiki.org)

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