5ZID Hydrolase date Mar 14, 2018
title Crystal Structure Of Human Dpp-Iv In Complex With Hl2
authors L.Zhu, H.Li, F.Wu
compound source
Molecule: Dipeptidyl Peptidase 4
Chain: A, B
Fragment: Dipeptidyl Peptidase 4 Soluble Form
Synonym: Adabp,Adenosine Deaminase Complexing Protein 2,Adc Dipeptidyl Peptidase Iv,Dpp Iv,T-Cell Activation Antigen Cd
Ec: 3.4.14.5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpp4, Adcp2, Cd26
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.070 126.190 118.620 90.00 99.30 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 9EL, MAN, NAG enzyme Hydrolase E.C.3.4.14.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • virus receptor activity
  • chemorepellent activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (5zid.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 5ZID
  • CSU: Contacts of Structural Units for 5ZID
  • Structure Factors (550 Kb)
  • Retrieve 5ZID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZID from S2C, [Save to disk]
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 5ZID
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zid_B] [5zid_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZID
  • Community annotation for 5ZID at PDBWiki (http://pdbwiki.org)

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