5ZJS	Transcription Dna	date	Mar 22, 2018
title	Structure Of Abdbexd Complex Bound To A 'Blue14' Dna Sequen
authors	N.Baburajendran, T.Zeiske, A.Kaczynska, R.Mann, B.Honig, L.Shapir A.G.Palmer
compound		source
Molecule: Homeobox Protein Abdominal-B Chain: A Synonym: Infraabdominal 7,Iab-7,P3,Ph189 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Abd-B, Cg10291 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Homeobox Protein Extradenticle Chain: B Synonym: Dpbx Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Exd, Cg8933 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Gptpcpaptptpapaptpcpaptpgp Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Drosophila Melanogaster Organism_taxid: 7227
Molecule: Dna (5'-D(Gpcpaptpgpaptptpapaptpgpap Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Drosophila Melanogaster Organism_taxid: 7227
symmetry	Space Group: C 1 2 1	R_factor 0.253 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.760 49.658 96.774 90.00 109.03 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites., Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS, Cell Rep. 2018 Aug 28;24(9):2221-2230. doi: 10.1016/j.celrep.2018.07.100. PMID:30157419

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (5zjs.pdb1.gz) 67 Kb CSU: Contacts of Structural Units for 5ZJS Structure Factors (69 Kb) Retrieve 5ZJS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ZJS from S2C, [Save to disk]

View 5ZJS in 3D

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Visual 3D analysis of 5ZJS

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5zjs from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5zjs_A] [5zjs_C] [5zjs_D] [5zjs_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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