6A02 Unknown Function date Jun 05, 2018
title Salmonella Typhi Yfdx In The F222 Space Group At 1.4 A Resol
authors B.Ku, H.S.Lee, S.J.Kim
compound source
Molecule: Yfdx Protein
Chain: A
Synonym: Yfdx From Salmonella Typhi
Engineered: Yes
 Organism_scientific: Salmonella Enterica I
Organism_taxid: 59201
Gene: Yfdx, Cvr97_27555, Se14_03224
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: F 2 2 2
R_factor 0.189 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.831 92.459 95.487 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CL, NA enzyme
Primary referenceStructural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence., Lee HS, Lee S, Kim JS, Lee HR, Shin HC, Lee MS, Jin KS, Kim CH, Ku B, Ryu CM, Kim SJ, Front Microbiol. 2019 Jan 14;9:3329. doi: 10.3389/fmicb.2018.03329. eCollection, 2018. PMID:30692978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (6a02.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6A02
  • CSU: Contacts of Structural Units for 6A02
  • Structure Factors (264 Kb)
  • Retrieve 6A02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A02 from S2C, [Save to disk]
    • View 6A02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6A02
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a02_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6A02
  • Community annotation for 6A02 at PDBWiki (http://pdbwiki.org)

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