6A5N	Gene Regulation Dna	date	Jun 24, 2018
title	Crystal Structure Of Arabidopsis Thaliana Suvh6 In Complex W Methylated Dna
authors	X.Li, J.Du
compound		source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-9 S Suvh6; Chain: A Synonym: Histone H3-K9 Methyltransferase 6,H3-K9-Hmtase 6,P Domain Group 23,Suppressor Of Variegation 3-9 Homolog Prote Su(Var)3-9 Homolog Protein 6; Ec: 2.1.1.43 Engineered: Yes Mutation: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Suvh6, Sdg23, Set23, At2g22740, T9i22.18 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Sumo
Molecule: Dna (5'-D(Gpapgptpapcptp(5cm)Papgpcpa 3'); Chain: C Engineered: Yes Other_details: Methylated Dna		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Cpapcptpgpcptpgpapgptpapcp Chain: D Engineered: Yes Other_details: Complementary Dna		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.230 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.137 79.443 107.845 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	5CM, ZN	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation., Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J, Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):E8793-E8802. doi:, 10.1073/pnas.1809841115. Epub 2018 Aug 27. PMID:30150382

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk] Biological Unit Coordinates (6a5n.pdb1.gz) 187 Kb LPC: Ligand-Protein Contacts for 6A5N CSU: Contacts of Structural Units for 6A5N Structure Factors (358 Kb) Retrieve 6A5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6A5N from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6a5n_D] [6a5n_C] [6a5n_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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