6A6B Protein Fibril date Jun 27, 2018
title Cryo-Em Structure Of Alpha-Synuclein Fiber
authors Y.W.Li, C.Y.Zhao, F.Luo, Z.Liu, X.Gui, Z.Luo, X.Zhang, D.Li, C.Liu, X
compound source
Molecule: Alpha-Synuclein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 37-99
Synonym: Non-A Beta Component Of Ad Amyloid,Non-A4 Componen Amyloid Precursor,Nacp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snca, Nacp, Park1
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.07 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceAmyloid fibril structure of alpha-synuclein determined by cryo-electron microscopy., Li Y, Zhao C, Luo F, Liu Z, Gui X, Luo Z, Zhang X, Li D, Liu C, Li X, Cell Res. 2018 Sep;28(9):897-903. doi: 10.1038/s41422-018-0075-x. Epub 2018 Jul, 31. PMID:30065316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (6a6b.pdb1.gz) 93 Kb
  • CSU: Contacts of Structural Units for 6A6B
  • Retrieve 6A6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A6B from S2C, [Save to disk]
  • View 6A6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A6B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a6b_A] [6a6b_B] [6a6b_C] [6a6b_E] [6a6b_D] [6a6b_F] [6a6b_H] [6a6b_I] [6a6b_G] [6a6b_L] [6a6b_J] [6a6b_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A6B
  • Community annotation for 6A6B at PDBWiki (http://pdbwiki.org)

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