6AFG	Hydrolase	date	Aug 08, 2018
title	Dj-1 With Compound 9
authors	J.M.M.Caaveiro, S.Tashiro, K.Tsumoto
compound		source
Molecule: Proteinnucleic Acid Deglycase Dj-1 Chain: A Synonym: Maillard Deglycase,Oncogene Dj1,Parkinson Disease Parkinsonism-Associated Deglycase,Protein Dj-1,Dj-1; Ec: 3.1.2.-,3.5.1.-,3.5.1.124 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Park7 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 31 2 1	R_factor 0.116 R_Free 0.148
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.450 75.450 75.640 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	72V	enzyme	Hydrolase E.C.3.1.2 BRENDA
Gene Ontology	Chain Function Process Component A transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	Discovery and Optimization of Inhibitors of the Parkinson's Disease Associated Protein DJ-1., Tashiro S, Caaveiro JMM, Nakakido M, Tanabe A, Nagatoishi S, Tamura Y, Matsuda N, Liu D, Hoang QQ, Tsumoto K, ACS Chem Biol. 2018 Aug 15. doi: 10.1021/acschembio.8b00701. PMID:30063823

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (6afg.pdb1.gz) 136 Kb LPC: Ligand-Protein Contacts for 6AFG CSU: Contacts of Structural Units for 6AFG Structure Factors (2722 Kb) Retrieve 6AFG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6AFG from S2C, [Save to disk]

View 6AFG in 3D

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Visual 3D analysis of 6AFG

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6afg_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6AFG at PDBWiki (http://pdbwiki.org)

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