6AMT Immune System date Aug 11, 2017
title Human Class I Mhc Hla-A2 In Complex With Synthetic Peptide M
authors T.P.Riley, N.K.Singh, B.M.Baker
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, D
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B, E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Met-Met-Trp-Asp-Arg-Gly-Leu-Gly-Met-Met
Chain: C, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.297 84.930 84.322 90.00 89.97 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
E, B
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  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (6amt.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (6amt.pdb2.gz) 134 Kb
  • CSU: Contacts of Structural Units for 6AMT
  • Structure Factors (689 Kb)
  • Retrieve 6AMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AMT from S2C, [Save to disk]
  • View 6AMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AMT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6amt_C] [6amt_A] [6amt_E] [6amt_B] [6amt_D] [6amt_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AMT
  • Community annotation for 6AMT at PDBWiki (http://pdbwiki.org)

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