6AQT Dna date Aug 21, 2017
title Crystal Structure Of Z-Dna With 6-Fold Twinning_z3a
authors Z.Luo, Z.Dauter, M.Gilski
compound source
Molecule: Dna (5'-D(Cpgpcpgpcpg)-3')
Chain: A, B, C, D, E, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.920 42.890 30.950 90.00 119.98 90.00
method X-Ray Diffractionresolution 1.05 Å
Primary referenceFour highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA., Luo Z, Dauter Z, Gilski M, Acta Crystallogr D Struct Biol. 2017 Nov 1;73(Pt 11):940-951. doi:, 10.1107/S2059798317014954. Epub 2017 Oct 30. PMID:29095165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (6aqt.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (6aqt.pdb2.gz) 11 Kb
  • Biological Unit Coordinates (6aqt.pdb3.gz) 11 Kb
  • CSU: Contacts of Structural Units for 6AQT
  • Structure Factors (414 Kb)
  • Retrieve 6AQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AQT from S2C, [Save to disk]
  • View 6AQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AQT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aqt_D] [6aqt_E] [6aqt_B] [6aqt_C] [6aqt_A] [6aqt_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AQT
  • Community annotation for 6AQT at PDBWiki (http://pdbwiki.org)

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