6AUD Transferase Transferase Inhbitor date Aug 31, 2017
title Pi3k-Gamma K802t In Complex With Cpd 8 10-((1-(Tert-Butyl)Pi Yl)Sulfinyl)-2-(1-Isopropyl-1h-1,2,4-Triazol-5-Yl)-5,6- Dihydrobenzo[F]Imidazo[1,2-D][1,4]Oxazepine
authors J.M.Murray, M.Ultsch
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: P110 Gamma, Residues 144-1102
Synonym: Ptdins-3-Kinase Subunit Gamma,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Gamma,P110g Phosphoinositide-3-Kinase Catalytic Gamma Polypeptide, Serinethreonine Protein Kinase Pik3cg,P120-Pi3k;
Ec: 2.7.1.153,2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.051 66.065 102.492 90.00 98.06 90.00
method X-Ray Diffractionresolution 2.02 Å
ligand BWY enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of Selective Benzoxazepin PI3Kdelta Inhibitors Through Control of Dihedral Angles., Safina BS, Elliott RL, Forrest AK, Heald RA, Murray JM, Nonomiya J, Pang J, Salphati L, Seward EM, Staben ST, Ultsch M, Wei B, Yang W, Sutherlin DP, ACS Med Chem Lett. 2017 Aug 25;8(9):936-940. doi: 10.1021/acsmedchemlett.7b00170., eCollection 2017 Sep 14. PMID:28947940
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (6aud.pdb1.gz) 284 Kb
  • LPC: Ligand-Protein Contacts for 6AUD
  • CSU: Contacts of Structural Units for 6AUD
  • Structure Factors (1324 Kb)
  • Retrieve 6AUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AUD from S2C, [Save to disk]
  • View 6AUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AUD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aud_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AUD
  • Community annotation for 6AUD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science