6B0Q Transcription Dna date Sep 14, 2017
title Zinc Finger Domain Of Wt1(-Kts Form) With 13+1mer Oligonucle 3' Triplet Tgt
authors J.R.Horton, X.Cheng
compound source
Molecule: Wilms Tumor Protein
Chain: D, A
Synonym: Wt33
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wt1
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Dna (5'-D(Pgpcpgptpgpgpgpapgptpgptpt
Chain: E, B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Papapcpapcptpcpcpcpapcpgpc
Chain: F, C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 63
R_factor 0.225 R_Free 0.241
length a length b length c angle alpha angle beta angle gamma
161.664 161.664 42.172 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.79 Å
ligand SO4, ZN enzyme
Primary referenceRole for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites., Wang D, Horton JR, Zheng Y, Blumenthal RM, Zhang X, Cheng X, Nucleic Acids Res. 2017 Dec 27. pii: 4780158. doi: 10.1093/nar/gkx1274. PMID:29294058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (6b0q.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (6b0q.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 6B0Q
  • CSU: Contacts of Structural Units for 6B0Q
  • Structure Factors (402 Kb)
  • Retrieve 6B0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B0Q from S2C, [Save to disk]
  • View 6B0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6B0Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6b0q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b0q_D] [6b0q_E] [6b0q_A] [6b0q_C] [6b0q_B] [6b0q_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6B0Q
  • Community annotation for 6B0Q at PDBWiki (http://pdbwiki.org)

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