6B3I Lipid Binding Protein date Sep 21, 2017
title Annexin A13a
authors K.M.Mcculloch, T.M.Iverson
compound source
Molecule: Annexin
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anxa13
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
190.623 93.815 94.858 90.00 106.02 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAn alternative N-terminal fold of the intestine-specific annexin A13a induces dimerization and regulates membrane-binding., McCulloch KM, Yamakawa I, Shifrin DA Jr, McConnell RE, Foegeding NJ, Singh PK, Mao S, Tyska MJ, Iverson TM, J Biol Chem. 2019 Mar 8;294(10):3454-3463. doi: 10.1074/jbc.RA118.004571. Epub, 2019 Jan 4. PMID:30610115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (6b3i.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (6b3i.pdb2.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 6B3I
  • CSU: Contacts of Structural Units for 6B3I
  • Structure Factors (426 Kb)
  • Retrieve 6B3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B3I from S2C, [Save to disk]
    • View 6B3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6B3I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b3i_B] [6b3i_C] [6b3i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6B3I
  • Community annotation for 6B3I at PDBWiki (http://pdbwiki.org)

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