6BA8 Hydrolase date Oct 12, 2017
title Ybtt - Type II Thioesterase From Yersiniabactin Nrpspks Bio Pathway
authors T.J.Brett, D.L.Kober, S.I.Ohlemacher, J.P.Henderson
compound source
Molecule: Iron Aquisition Yersiniabactin Synthesis Enzyme,
Chain: A
Synonym: Surfactin Synthase Thioesterase Subunit, Thioester Yersiniabactin Siderophore Biosynthetic Protein, Yersiniaba Synthetase, Thioesterase Component;
Ec: 3.1.2.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Irp4, Srfad, A4t40_14730, Aml07_28155, Aus26_21405, Aw106_20985, Econih1_11380, Ers085406_04094, Ers150876_0395 Forc28_2175, Ms6198_22290, Sk85_02209, Wm48_10340;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2 (De3)
symmetry Space Group: P 4 21 2
R_factor 0.192 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.301 82.301 81.935 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceYbtT is a low-specificity type II thioesterase that maintains production of the metallophore yersiniabactin in pathogenic enterobacteria., Ohlemacher SI, Xu Y, Kober DL, Malik M, Nix JC, Brett TJ, Henderson JP, J Biol Chem. 2018 Oct 24. pii: RA118.005752. doi: 10.1074/jbc.RA118.005752. PMID:30355735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (6ba8.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 6BA8
  • Structure Factors (951 Kb)
  • Retrieve 6BA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BA8 from S2C, [Save to disk]
  • View 6BA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BA8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ba8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BA8
  • Community annotation for 6BA8 at PDBWiki (http://pdbwiki.org)

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