6BAW Chaperone Inhibitor date Oct 16, 2017
title Structure Of Grp94 With A Selective Resorcinylic Inhibitor.
authors N.L.S.Que, D.T.Gewirth
compound source
Molecule: Endoplasmin
Chain: B, A, C, D
Synonym: 94 Kda Glucose-Regulated Protein,Grp-94,Heat Shock 90 Kda Beta Member 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Canis Lupus Familiaris
Organism_common: Dog
Organism_taxid: 9615
Gene: Hsp90b1, Grp94, Tra1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.647 93.710 175.408 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand D57, EDO, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure Based Design of a Grp94-Selective Inhibitor: Exploiting a Key Residue in Grp94 To Optimize Paralog-Selective Binding., Que NLS, Crowley VM, Duerfeldt AS, Zhao J, Kent CN, Blagg BSJ, Gewirth DT, J Med Chem. 2018 Apr 12;61(7):2793-2805. doi: 10.1021/acs.jmedchem.7b01608. Epub , 2018 Mar 20. PMID:29528635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (6baw.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (6baw.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (6baw.pdb3.gz) 38 Kb
  • Biological Unit Coordinates (6baw.pdb4.gz) 38 Kb
  • Biological Unit Coordinates (6baw.pdb5.gz) 72 Kb
  • Biological Unit Coordinates (6baw.pdb6.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 6BAW
  • CSU: Contacts of Structural Units for 6BAW
  • Structure Factors (1076 Kb)
  • Retrieve 6BAW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BAW from S2C, [Save to disk]
  • View 6BAW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BAW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6baw_C] [6baw_A] [6baw_B] [6baw_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BAW
  • Community annotation for 6BAW at PDBWiki (http://pdbwiki.org)

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