OCA Atlas for 6BDF

6BDF

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
L, R, X, J, 1, P, V, H, F, D, B, Z, T, N
Q, A, K, Y, E, 0, I, G, O, S, M, C, W, U

Primary reference

2.8 A resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy., Campbell MG, Veesler D, Cheng A, Potter CS, Carragher B, Elife. 2015 Mar 11;4. doi: 10.7554/eLife.06380. PMID:25760083

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (908 Kb) [Save to disk]

Biological Unit Coordinates (6bdf.pdb1.gz) 904 Kb

CSU: Contacts of Structural Units for 6BDF

Retrieve 6BDF in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6BDF from S2C, [Save to disk]

View 6BDF in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6bdf_G] [6bdf_0] [6bdf_1] [6bdf_A] [6bdf_B] [6bdf_C] [6bdf_D] [6bdf_E] [6bdf_Q] [6bdf_F] [6bdf_H] [6bdf_I] [6bdf_J] [6bdf_K] [6bdf_L] [6bdf_M] [6bdf_N] [6bdf_O] [6bdf_P] [6bdf_R] [6bdf_S] [6bdf_T] [6bdf_U] [6bdf_V] [6bdf_W] [6bdf_X] [6bdf_Y] [6bdf_Z]

SWISS-PROT database:

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