6BEM Transferase Dna date Oct 25, 2017
title Ternary Complex Crystal Structure Of Dna Polymerase Beta Wit Of Beta-Gamma-Chcl-Dctp
authors V.K.Batra, S.H.Wilson
compound source
Molecule: Template Strand
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Primer Strand
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Downstream Primer Strand
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7,4.2.99.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tap56
Expression_system_plasmid: Pwl11
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.806 79.995 55.521 90.00 107.68 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand 2DA, CL, DC, DJJ, MG, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (6bem.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 6BEM
  • CSU: Contacts of Structural Units for 6BEM
  • Structure Factors (299 Kb)
  • Retrieve 6BEM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BEM from S2C, [Save to disk]
  • View 6BEM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BEM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bem_P] [6bem_A] [6bem_T] [6bem_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BEM
  • Community annotation for 6BEM at PDBWiki (http://pdbwiki.org)

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