6BFD	Hydrolase Hydrolase Inhibitor	date	Oct 26, 2017
title	Bace Crystal Structure With Hydroxy Pyrrolidine Inhibitor
authors	D.E.Timm
compound		source
Molecule: Beta-Secretase 1 Chain: A, B Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.173 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.460 89.410 131.410 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.62 Å
ligand	DJS, GOL	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Optimization of Hydroxyethylamine Transition State Isosteres as Aspartic Protease Inhibitors by Exploiting Conformational Preferences., Bueno AB, Agejas J, Broughton HB, Dally R, Durham T, Espinosa JF, Gonzalez R, Hahn PJ, Marcos A, Rodriguez R, Sanz G, Soriano J, Timm DE, Vidal P, Yang HC, McCarthy J, J Med Chem. 2017 Oct 31. doi: 10.1021/acs.jmedchem.7b01304. PMID:29088532

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (6bfd.pdb1.gz) 78 Kb Biological Unit Coordinates (6bfd.pdb2.gz) 77 Kb LPC: Ligand-Protein Contacts for 6BFD CSU: Contacts of Structural Units for 6BFD Structure Factors (1125 Kb) Retrieve 6BFD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6BFD from S2C, [Save to disk]

View 6BFD in 3D

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Visual 3D analysis of 6BFD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6bfd_B] [6bfd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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