6BFP Hydrolase Hydrolase Inhibitor date Oct 26, 2017
title Bovine Trypsin Bound To Potent Inhibitor
authors J.R.Partridge, R.M.Choy
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.129 R_Free 0.141
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.510 58.330 66.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.29 Å
ligand CA, DJY enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of full-length plasma kallikrein bound to highly specific inhibitors describe a new mode of targeted inhibition., Partridge JR, Choy RM, Silva-Garcia A, Yu C, Li Z, Sham H, Metcalf B, J Struct Biol. 2019 Mar 12. pii: S1047-8477(19)30046-2. doi:, 10.1016/j.jsb.2019.03.001. PMID:30876891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (6bfp.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 6BFP
  • CSU: Contacts of Structural Units for 6BFP
  • Structure Factors (598 Kb)
  • Retrieve 6BFP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BFP from S2C, [Save to disk]
    • View 6BFP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BFP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bfp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BFP
  • Community annotation for 6BFP at PDBWiki (http://pdbwiki.org)

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