6BFW Hydrolase Hydrolase Inhibitor date Oct 27, 2017
title Bace Crystal Structure With Hydroxy Morpholine Inhibitor
authors D.E.Timm
compound source
Molecule: Beta-Secretase 1
Chain: A, B
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.300 86.130 109.420 90.00 100.95 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand DK7, GOL enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOptimization of Hydroxyethylamine Transition State Isosteres as Aspartic Protease Inhibitors by Exploiting Conformational Preferences., Bueno AB, Agejas J, Broughton HB, Dally R, Durham T, Espinosa JF, Gonzalez R, Hahn PJ, Marcos A, Rodriguez R, Sanz G, Soriano J, Timm DE, Vidal P, Yang HC, McCarthy J, J Med Chem. 2017 Oct 31. doi: 10.1021/acs.jmedchem.7b01304. PMID:29088532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (6bfw.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (6bfw.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 6BFW
  • CSU: Contacts of Structural Units for 6BFW
  • Structure Factors (721 Kb)
  • Retrieve 6BFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BFW from S2C, [Save to disk]
  • View 6BFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BFW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bfw_B] [6bfw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BFW
  • Community annotation for 6BFW at PDBWiki (http://pdbwiki.org)

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