6BKL Membrane Protein date Nov 08, 2017
title Influenza A M2 Transmembrane Domain Bound To Rimantadine
authors J.L.Thomaston, W.F.Degrado
compound source
Molecule: Matrix Protein 2
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.460 47.840 48.530 90.00 96.76 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EU7, RIM enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceInhibitors of the M2 Proton Channel Engage and Disrupt Transmembrane Networks of Hydrogen-Bonded Waters., Thomaston JL, Polizzi NF, Konstantinidi A, Wang J, Kolocouris A, DeGrado WF, J Am Chem Soc. 2018 Sep 12. doi: 10.1021/jacs.8b06741. PMID:30165017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (6bkl.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (6bkl.pdb2.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 6BKL
  • CSU: Contacts of Structural Units for 6BKL
  • Structure Factors (302 Kb)
  • Retrieve 6BKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BKL from S2C, [Save to disk]
    • View 6BKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BKL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bkl_E] [6bkl_G] [6bkl_C] [6bkl_B] [6bkl_D] [6bkl_A] [6bkl_H] [6bkl_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BKL
  • Community annotation for 6BKL at PDBWiki (http://pdbwiki.org)

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