6BL8 Transferase date Nov 09, 2017
title Predicting The Conformational Variability Of Abl Tyrosine Ki Molecular Dynamics Simulations And Markov State Models
authors D.K.Clawson, C.Gao
compound source
Molecule: Tyrosine-Protein Kinase Abl1
Chain: A, B
Fragment: Unp Residues 233-504
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1, Tyrosine-Protein Kinase 1, Proto-Oncogene C-Abl, P150;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl1, Abl, Jtk7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.175 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.840 131.050 57.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PVB, SO4 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePredicting the Conformational Variability of Abl tyrosine kinase using Molecular Dynamics Simulations and Markov State Models., Meng Y, Gao C, Clawson DK, Atwell S, Russell M, Vieth M, Roux B, J Chem Theory Comput. 2018 Feb 23. doi: 10.1021/acs.jctc.7b01170. PMID:29474075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (6bl8.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (6bl8.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 6BL8
  • CSU: Contacts of Structural Units for 6BL8
  • Structure Factors (794 Kb)
  • Retrieve 6BL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BL8 from S2C, [Save to disk]
  • View 6BL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BL8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bl8_B] [6bl8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BL8
  • Community annotation for 6BL8 at PDBWiki (http://pdbwiki.org)

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