6BLY Protein Binding date Nov 12, 2017
title Cryo-Em Structure Of Human Cpsf-160-Wdr33 Complex At 3.36a R
authors Y.Sun, Y.Zhang, K.Hamilton, T.Walz, L.Tong
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: A
Synonym: Cleavage And Polyadenylation Specificity Factor 16 Subunit, Cpsf 160 Kda Subunit;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf1, Cpsf160
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Pre-Mrna 3' End Processing Protein Wdr33
Chain: B
Synonym: Wd Repeat-Containing Protein 33, Wd Repeat-Contain Protein Wdc146;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr33, Wdc146
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.36 Å
Gene
Ontology
ChainFunctionProcessComponent
A

  • mRNA cleavage and polyadenyl...
    • Primary referenceMolecular basis for the recognition of the human AAUAAA polyadenylation signal., Sun Y, Zhang Y, Hamilton K, Manley JL, Shi Y, Walz T, Tong L, Proc Natl Acad Sci U S A. 2017 Dec 5. pii: 1718723115. doi:, 10.1073/pnas.1718723115. PMID:29208711
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (6bly.pdb1.gz) 218 Kb
  • CSU: Contacts of Structural Units for 6BLY
  • Retrieve 6BLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BLY from S2C, [Save to disk]
    • View 6BLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BLY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bly_B] [6bly_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BLY
  • Community annotation for 6BLY at PDBWiki (http://pdbwiki.org)

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