6BRP Ligase date Nov 30, 2017
title F-Box Protein Form 2
authors N.Shabek, N.Zheng, H.Mao, T.R.Hinds, F.Ticchiarelli, O.Leyser
compound source
Molecule: F-Boxlrr-Repeat Max2 Homolog
Chain: B, D
Synonym: F-Box And Leucine-Rich Repeat Max2 Homolog,Protein
Engineered: Yes
Organism_scientific: Oryza Sativa Subsp. Japonica
Organism_common: Rice
Organism_taxid: 39947
Gene: D3, Os06g0154200, Loc_os06g06050, Osjnba0085l11.6-1
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590

Molecule: Skp1-Like Protein 1a
Chain: A, C
Synonym: Skp1-Like 1,Ufo-Binding Protein 1
Engineered: Yes

Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Skp1a, Ask1, Skp1, Uip1, At1g75950, T4o12.17
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.451 130.471 94.316 90.00 99.38 90.00
method X-Ray Diffractionresolution 2.39 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling., Shabek N, Ticchiarelli F, Mao H, Hinds TR, Leyser O, Zheng N, Nature. 2018 Nov;563(7733):652-656. doi: 10.1038/s41586-018-0743-5. Epub 2018 Nov, 21. PMID:30464344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (479 Kb) [Save to disk]
  • Biological Unit Coordinates (6brp.pdb1.gz) 239 Kb
  • Biological Unit Coordinates (6brp.pdb2.gz) 239 Kb
  • CSU: Contacts of Structural Units for 6BRP
  • Structure Factors (2169 Kb)
  • Retrieve 6BRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BRP from S2C, [Save to disk]
  • View 6BRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BRP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6brp_C] [6brp_B] [6brp_A] [6brp_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BRP
  • Community annotation for 6BRP at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science