6BTK Protein Fibril date Dec 06, 2017
title Segment From Bank Vole Prion Protein 168-176 Qynnqnnfv
authors C.Glynn, J.A.Rodriguez, D.R.Boyer, M.Gallagher-Jones
compound source
Molecule: Major Prion Protein
Chain: A
Fragment: Unp Residues 168-176
Engineered: Yes
Synthetic: Yes
Organism_scientific: Myodes Glareolus
Organism_common: Bank Vole
Organism_taxid: 447135
symmetry Space Group: P 1
R_factor 0.139 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
4.874 10.107 30.415 93.36 91.15 101.66
method X-Ray Diffractionresolution 1.10 Å
Primary referenceSub-angstrom cryo-EM structure of a prion protofibril reveals a polar clasp., Gallagher-Jones M, Glynn C, Boyer DR, Martynowycz MW, Hernandez E, Miao J, Zee CT, Novikova IV, Goldschmidt L, McFarlane HT, Helguera GF, Evans JE, Sawaya MR, Cascio D, Eisenberg DS, Gonen T, Rodriguez JA, Nat Struct Mol Biol. 2018 Jan 15. pii: 10.1038/s41594-017-0018-0. doi:, 10.1038/s41594-017-0018-0. PMID:29335561
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • Biological Unit Coordinates (6btk.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 6BTK
  • Structure Factors (52 Kb)
  • Retrieve 6BTK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BTK from S2C, [Save to disk]
  • View 6BTK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BTK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6btk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BTK
  • Community annotation for 6BTK at PDBWiki (http://pdbwiki.org)

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