6BXY Protein Binding, Transcription date Dec 19, 2017
title Menin In Complex With Mi-1481
authors D.Borkin, S.Klossowski, J.Pollock, B.Linhares, T.Cierpicki, J.Gre
compound source
Molecule: Menin
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Men1, Scg2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.319 80.539 122.341 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand DMS, EDO, EEV, PG4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComplexity of Blocking Bivalent Protein-Protein Interactions: Development of a Highly Potent Inhibitor of the Menin-Mixed-Lineage Leukemia Interaction., Borkin D, Klossowski S, Pollock J, Miao H, Linhares BM, Kempinska K, Jin Z, Purohit T, Wen B, He M, Sun D, Cierpicki T, Grembecka J, J Med Chem. 2018 Jun 14;61(11):4832-4850. doi: 10.1021/acs.jmedchem.8b00071. Epub, 2018 May 23. PMID:29738674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (6bxy.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 6BXY
  • CSU: Contacts of Structural Units for 6BXY
  • Structure Factors (1475 Kb)
  • Retrieve 6BXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BXY from S2C, [Save to disk]
    • View 6BXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BXY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bxy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BXY
  • Community annotation for 6BXY at PDBWiki (http://pdbwiki.org)

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