6C53 Protein Fibril date Jan 13, 2018
title Cryo-Em Structure Of The Type 1 Pilus Rod
authors W.Zheng, F.Wang, A.Luna-Rico, O.Francetic, S.J.Hultgren, E.H.Egel
compound source
Molecule: Type-1 Fimbrial Protein, A Chain
Chain: A, B, C, D, E, F, G, H, I, J, K
Synonym: Type-1a Pilin
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G


Primary referenceFunctional role of the type 1 pilus rod structure in mediating host-pathogen interactions., Spaulding CN, Schreiber HL, Zheng W, Dodson KW, Hazen JE, Conover MS, Wang F, Svenmarker P, Luna-Rico A, Francetic O, Andersson M, Hultgren S, Egelman EH, Elife. 2018 Jan 18;7. pii: 31662. doi: 10.7554/eLife.31662. PMID:29345620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (6c53.pdb1.gz) 206 Kb
  • CSU: Contacts of Structural Units for 6C53
  • Retrieve 6C53 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C53 from S2C, [Save to disk]
    • View 6C53 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6C53
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c53_H] [6c53_D] [6c53_G] [6c53_C] [6c53_K] [6c53_A] [6c53_B] [6c53_E] [6c53_I] [6c53_F] [6c53_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6C53
  • Community annotation for 6C53 at PDBWiki (http://pdbwiki.org)

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