6C7B Transferase Transferase Inhibitor date Jan 22, 2018
title Crystal Structure Of Mycobacterium Tuberculosis Malate Synth Complex With Methoxynaphthyldiketoacid
authors I.V.Krieger, J.C.Sacchettini, Tb Structural Genomics Consortiu
compound source
Molecule: Malate Synthase G
Chain: A
Ec: 2.3.3.9
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Glcb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.188 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.647 78.647 224.029 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand ENY, MG, PEG enzyme Transferase E.C.2.3.3.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnion-pi Interactions in Computer-Aided Drug Design: Modeling the Inhibition of Malate Synthase by Phenyl-Diketo Acids., Ellenbarger J, Krieger I, Huang HL, Gomez-Coca S, Ioerger TR, Sacchettini JC, Wheeler SE, Dunbar KR, J Chem Inf Model. 2018 Aug 23. doi: 10.1021/acs.jcim.8b00417. PMID:30137983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (6c7b.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 6C7B
  • CSU: Contacts of Structural Units for 6C7B
  • Structure Factors (395 Kb)
  • Retrieve 6C7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C7B from S2C, [Save to disk]
    • View 6C7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6C7B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c7b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6C7B
  • Community annotation for 6C7B at PDBWiki (http://pdbwiki.org)

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