6C9F Transferase date Jan 26, 2018
title Amp-Activated Protein Kinase Bound To Pharmacological Activa
authors Y.Yan, X.E.Zhou, S.Novick, S.J.Shaw, Y.Li, Y.Hitoshi, J.S.Brunzell P.R.Griffin, H.E.Xu, K.Melcher
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-1;
Chain: A
Synonym: Ampk Subunit Alpha-1,Acetyl-Coa Carboxylase Kinase Kinase,Hydroxymethylglutaryl-Coa Reductase Kinase,Hmgcr Kin Protein Kinase Prkaa1;
Ec: 2.7.11.1,2.7.11.27,2.7.11.31,2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkaa1, Ampk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-1
Chain: B
Synonym: Ampkb
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkab1, Ampk
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1
Chain: C
Synonym: Ampkg
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkag1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.228 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.289 123.289 406.594 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.92 Å
ligand AMP, R34, STU, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • cAMP-dependent protein kinas...


  • Primary referenceStructures of AMP-activated protein kinase bound to novel pharmacological activators in phosphorylated, non-phosphorylated, and nucleotide-free states., Yan Y, Zhou XE, Novick SJ, Shaw SJ, Li Y, Brunzelle JS, Hitoshi Y, Griffin PR, Xu HE, Melcher K, J Biol Chem. 2018 Nov 26. pii: RA118.004883. doi: 10.1074/jbc.RA118.004883. PMID:30478170
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (294 Kb) [Save to disk]
  • Biological Unit Coordinates (6c9f.pdb1.gz) 285 Kb
  • LPC: Ligand-Protein Contacts for 6C9F
  • CSU: Contacts of Structural Units for 6C9F
  • Structure Factors (724 Kb)
  • Retrieve 6C9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C9F from S2C, [Save to disk]
  • View 6C9F in 3D
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  • Visual 3D analysis of 6C9F
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c9f_C] [6c9f_A] [6c9f_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C9F
  • Community annotation for 6C9F at PDBWiki (http://pdbwiki.org)

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