6C9L Transcription date Jan 26, 2018
title Mef2b Apo Protein Structure
authors X.Lei, L.Chen
compound source
Molecule: Myocyte-Specific Enhancer Factor 2b
Chain: A, B, C, D, E, F
Synonym: Rsrfr2,Serum Response Factor-Like Protein 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mef2b, Xmef2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.780 178.490 43.410 90.00 96.36 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal Structure of Apo MEF2B Reveals New Insights in DNA Binding and Cofactor Interaction., Lei X, Shi H, Kou Y, Rajashekar N, Wu F, Sen C, Xu J, Chen L, Biochemistry. 2018 Jul 17;57(28):4047-4051. doi: 10.1021/acs.biochem.8b00439., Epub 2018 Jul 5. PMID:29944822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (6c9l.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (6c9l.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (6c9l.pdb3.gz) 50 Kb
  • CSU: Contacts of Structural Units for 6C9L
  • Structure Factors (1070 Kb)
  • Retrieve 6C9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C9L from S2C, [Save to disk]
  • View 6C9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c9l_B] [6c9l_D] [6c9l_A] [6c9l_E] [6c9l_F] [6c9l_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C9L
  • Community annotation for 6C9L at PDBWiki (http://pdbwiki.org)

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