6CER Oxidoreductase date Feb 12, 2018
title Human Pyruvate Dehydrogenase Complex E1 Component V138m Muta
authors M.J.Whitley, P.Arjunan, W.Furey
compound source
Molecule: Pyruvate Dehydrogenase E1 Component Subunit Alpha Form, Mitochondrial;
Chain: A, C, E, G
Synonym: Pdhe1-A Type I
Ec: 1.2.4.1
Engineered: Yes
Other_details: V138 Mutant
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdha1, Phe1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pyruvate Dehydrogenase E1 Component Subunit Beta, Mitochondrial;
Chain: B, D, F, H
Synonym: Pdhe1-B
Ec: 1.2.4.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdhb, Phe1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.760 123.919 128.279 90.00 118.12 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand MG, TDP, TPP enzyme Oxidoreductase E.C.1.2.4.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D
  • pyruvate dehydrogenase (NAD+...


    • Primary referencePyruvate dehydrogenase complex deficiency is linked to regulatory loop disorder in the alphaV138M variant of human pyruvate dehydrogenase., Whitley MJ, Arjunan P, Nemeria NS, Korotchkina LG, Park YH, Patel M, Jordan F, Furey WF, J Biol Chem. 2018 Jul 3. pii: RA118.003996. doi: 10.1074/jbc.RA118.003996. PMID:29970614
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (854 Kb) [Save to disk]
  • Biological Unit Coordinates (6cer.pdb1.gz) 427 Kb
  • Biological Unit Coordinates (6cer.pdb2.gz) 426 Kb
  • LPC: Ligand-Protein Contacts for 6CER
  • CSU: Contacts of Structural Units for 6CER
  • Structure Factors (625 Kb)
  • Retrieve 6CER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CER from S2C, [Save to disk]
    • View 6CER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CER
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cer_F] [6cer_D] [6cer_H] [6cer_G] [6cer_B] [6cer_E] [6cer_C] [6cer_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CER
  • Community annotation for 6CER at PDBWiki (http://pdbwiki.org)

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