6CG8 Dna Binding Protein Dna date Feb 19, 2018
title Structure Of C. Crescentus Gapr-Dna
authors M.A.Schumacher
compound source
Molecule: Upf0335 Protein B7z12_12435
Chain: A, B, D, E
Fragment: Residues 13-89
Engineered: Yes
Organism_scientific: Caulobacter Vibrioides
Organism_common: Caulobacter Crescentus
Organism_taxid: 155892
Gene: B7z12_12435, Ca606_13135
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Tptpapapapaptptpapapa)-3')
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tptptpapaptptptptpapa)-3')
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.249 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.913 35.579 115.559 90.00 90.18 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceA Bacterial Chromosome Structuring Protein Binds Overtwisted DNA to Stimulate Type II Topoisomerases and Enable DNA Replication., Guo MS, Haakonsen DL, Zeng W, Schumacher MA, Laub MT, Cell. 2018 Sep 7. pii: S0092-8674(18)31045-6. doi: 10.1016/j.cell.2018.08.029. PMID:30220456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (6cg8.pdb1.gz) 118 Kb
  • CSU: Contacts of Structural Units for 6CG8
  • Structure Factors (374 Kb)
  • Retrieve 6CG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CG8 from S2C, [Save to disk]
  • View 6CG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CG8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cg8_F] [6cg8_C] [6cg8_A] [6cg8_B] [6cg8_D] [6cg8_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CG8
  • Community annotation for 6CG8 at PDBWiki (http://pdbwiki.org)

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