6CRG Hydrolase Hydrolase Inhibitor date Mar 17, 2018
title Crystal Structure Of Shp2 E76k Gof Mutant In Complex With Sh
authors T.Stams, M.Fodor
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 11
Chain: A, B
Synonym: Protein-Tyrosine Phosphatase 1d,Ptp-1d,Protein-Tyr Phosphatase 2c,Ptp-2c,Sh-Ptp2,Shp2,Sh-Ptp3;
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn11, Ptp2c, Shptp2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Star
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.436 214.088 55.540 90.00 95.66 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand 5OD, GOL, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural reorganization of SHP2 by oncogenic mutations and implications for oncoprotein resistance to allosteric inhibition., LaRochelle JR, Fodor M, Vemulapalli V, Mohseni M, Wang P, Stams T, LaMarche MJ, Chopra R, Acker MG, Blacklow SC, Nat Commun. 2018 Oct 30;9(1):4508. doi: 10.1038/s41467-018-06823-9. PMID:30375388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (6crg.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (6crg.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 6CRG
  • CSU: Contacts of Structural Units for 6CRG
  • Structure Factors (926 Kb)
  • Retrieve 6CRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CRG from S2C, [Save to disk]
  • View 6CRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CRG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6crg_B] [6crg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CRG
  • Community annotation for 6CRG at PDBWiki (http://pdbwiki.org)

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