6CRX Viral Protein date Mar 19, 2018
title Sars Spike Glycoprotein, Stabilized Variant, Two S1 Ctds In Upwards Conformation
authors R.N.Kirchdoerfer, N.Wang, J.Pallesen, H.L.Turner, C.A.Cottrell, J.S.Mclellan, A.B.Ward
compound source
Molecule: Spike Glycoprotein,Fibritin
Chain: B, C, A
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Sars Coronavirus, Enterobacteria T4;
Organism_common: Sars-Cov, Bacteriophage T4
Organism_taxid: 227859, 10665
Gene: S, 2, Wac, T4tp161
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis., Kirchdoerfer RN, Wang N, Pallesen J, Wrapp D, Turner HL, Cottrell CA, Corbett KS, Graham BS, McLellan JS, Ward AB, Sci Rep. 2018 Oct 24;8(1):15701. doi: 10.1038/s41598-018-34171-7. PMID:30356097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (481 Kb) [Save to disk]
  • Biological Unit Coordinates (6crx.pdb1.gz) 467 Kb
  • LPC: Ligand-Protein Contacts for 6CRX
  • CSU: Contacts of Structural Units for 6CRX
  • Retrieve 6CRX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CRX from S2C, [Save to disk]
    • View 6CRX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CRX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6crx_A] [6crx_C] [6crx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CRX
  • Community annotation for 6CRX at PDBWiki (http://pdbwiki.org)

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