6D28	Chaperone	date	Apr 13, 2018
title	Crystal Structure Of The N-Domain Of The Er Hsp90 Chaperone Complex With The Specific Ligand Neca
authors	K.L.Soldano, A.Jivan, C.V.Nicchitta, D.T.Gewirth
compound		source
Molecule: Endoplasmin Chain: A Synonym: 94 Kda Glucose-Regulated Protein,Grp-94,Heat Shock 90 Kda Beta Member 1; Engineered: Yes		Organism_scientific: Canis Lupus Familiaris Organism_common: Dog Organism_taxid: 9615 Gene: Hsp90b1, Grp94, Tra1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: C 2 2 21	R_factor 0.182 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.200 99.180 63.071 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	M2M, NEC	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the N-terminal domain of GRP94. Basis for ligand specificity and regulation., Soldano KL, Jivan A, Nicchitta CV, Gewirth DT, J Biol Chem. 2003 Nov 28;278(48):48330-8. Epub 2003 Sep 11. PMID:12970348

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (6d28.pdb1.gz) 81 Kb LPC: Ligand-Protein Contacts for 6D28 CSU: Contacts of Structural Units for 6D28 Structure Factors (553 Kb) Retrieve 6D28 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D28 from S2C, [Save to disk]

View 6D28 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6D28

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d28_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6D28

Community annotation for 6D28 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---