6D2P		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component C
Primary reference	The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen., Havenar-Daughton C, Sarkar A, Kulp DW, Toy L, Hu X, Deresa I, Kalyuzhniy O, Kaushik K, Upadhyay AA, Menis S, Landais E, Cao L, Diedrich JK, Kumar S, Schiffner T, Reiss SM, Seumois G, Yates JR, Paulson JC, Bosinger SE, Wilson IA, Schief WR, Crotty S, Sci Transl Med. 2018 Jul 4;10(448). pii: 10/448/eaat0381. doi:, 10.1126/scitranslmed.aat0381. PMID:29973404

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (6d2p.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 6D2P CSU: Contacts of Structural Units for 6D2P Structure Factors (459 Kb) Retrieve 6D2P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D2P from S2C, [Save to disk]

View 6D2P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d2p_C] [6d2p_H] [6d2p_L] SWISS-PROT database:

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