6D2P	Immune System	date	Apr 13, 2018
title	Crystal Structure Of Ioma-Class Clk31 Fab From An Hiv-1 Naiv Complex With A Germline-Targeting Gp120 Engineered Outer Do Gt8 At 2.6 A
authors	A.Sarkar, I.A.Wilson
compound		source
Molecule: Germline-Targeting Hiv-1 Gp120 Engineered Outer D Gt8; Chain: C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293s Expression_system_vector_type: Plasmid Expression_system_plasmid: Phlsec
Molecule: Iomaclass Naive Clk31 Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293 Freestyle Expression_system_vector_type: Plasmid Expression_system_plasmid: Pfusess-Chig-Hg1
Molecule: Iomaclass Naive Clk31 Fab Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293 Freestyle Expression_system_vector_type: Plasmid Expression_system_plasmid: Pfusess-Chig-Hg1
symmetry	Space Group: P 21 21 2	R_factor 0.213 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.300 66.636 76.518 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component C
Primary reference	The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen., Havenar-Daughton C, Sarkar A, Kulp DW, Toy L, Hu X, Deresa I, Kalyuzhniy O, Kaushik K, Upadhyay AA, Menis S, Landais E, Cao L, Diedrich JK, Kumar S, Schiffner T, Reiss SM, Seumois G, Yates JR, Paulson JC, Bosinger SE, Wilson IA, Schief WR, Crotty S, Sci Transl Med. 2018 Jul 4;10(448). pii: 10/448/eaat0381. doi:, 10.1126/scitranslmed.aat0381. PMID:29973404

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (6d2p.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 6D2P CSU: Contacts of Structural Units for 6D2P Structure Factors (459 Kb) Retrieve 6D2P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D2P from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d2p_L] [6d2p_C] [6d2p_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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