6D39 Fluorescent Protein date Apr 15, 2018
title Photodissociable Dimeric Dronpa Green Fluorescent Protein Va (Pddronpav)
authors X.Zhou, L.Fan, M.Lin
compound source
Molecule: Fluorescent Protein Dronpa
Chain: A
Engineered: Yes
 Organism_scientific: Echinophyllia Sp. Sc22
Organism_taxid: 301887
Gene: Dronpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.195 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.917 51.917 163.581 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.83 Å
ligand GYC, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptical control of cell signaling by single-chain photoswitchable kinases., Zhou XX, Fan LZ, Li P, Shen K, Lin MZ, Science. 2017 Feb 24;355(6327):836-842. doi: 10.1126/science.aah3605. PMID:28232577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (6d39.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 6D39
  • CSU: Contacts of Structural Units for 6D39
  • Structure Factors (142 Kb)
  • Retrieve 6D39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D39 from S2C, [Save to disk]
    • View 6D39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D39
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D39
  • Community annotation for 6D39 at PDBWiki (http://pdbwiki.org)

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