OCA Atlas for 6D6U

6D6U

Transport Protein

date

Apr 22, 2018

title

Human Gaba-A Receptor Alpha1-Beta2-Gamma2 Subtype In Complex And Flumazenil, Conformation A

authors

S.Zhu, C.M.Noviello, J.Teng, R.M.Walsh Jr, J.J.Kim, R.E.Hibbs

compound

source

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Beta-2,G Aminobutyric Acid Receptor Subunit Beta-2;
Chain: A, C
Synonym: Gaba(A) Receptor Subunit Beta-2,Gaba(A) Receptor S Beta-2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabrb2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_cell_line: Hek293
Expression_system_atcc_number: Crl-3022
Expression_system_plasmid: Pezt-Bm

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Alpha-1, Aminobutyric Acid Receptor Subunit Alpha-1;
Chain: B, D
Synonym: Gaba(A) Receptor Subunit Alpha-1,Gaba(A) Receptor Alpha-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabra1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_cell_line: Hek293
Expression_system_atcc_number: Crl-3022

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Gamma-2, Aminobutyric Acid Receptor Subunit Gamma-2;
Chain: E
Synonym: Gaba(A) Receptor Subunit Gamma-2,Gaba(A) Receptor Gamma-2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabrg2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_cell_line: Hek293
Expression_system_atcc_number: Crl-3022
Expression_system_plasmid: Pezt-Bm

Molecule: Kappa Fab Light Chain
Chain: I, L

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc

Molecule: Igg2b Fab Heavy Chain
Chain: J, K

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.92 Å

ligand

ABU, BMA, FYP, MAN, NAG, Y01

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C
D, B
E

Primary reference

Structure of a human synaptic GABAA receptor., Zhu S, Noviello CM, Teng J, Walsh RM Jr, Kim JJ, Hibbs RE, Nature. 2018 Jul;559(7712):67-72. doi: 10.1038/s41586-018-0255-3. Epub 2018 Jun, 27. PMID:29950725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]

Biological Unit Coordinates (6d6u.pdb1.gz) 314 Kb

LPC: Ligand-Protein Contacts for 6D6U

CSU: Contacts of Structural Units for 6D6U

Retrieve 6D6U in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6D6U from S2C, [Save to disk]

View 6D6U in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6D6U

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d6u_J] [6d6u_B] [6d6u_K] [6d6u_E] [6d6u_D] [6d6u_L] [6d6u_I] [6d6u_C] [6d6u_A]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6D6U

Community annotation for 6D6U at PDBWiki (http://pdbwiki.org)

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